Discover Molecular Twins & Predict Bioactivity

Advanced twin detection algorithm combined with machine learning-powered pIC50 prediction for accelerated drug discovery

  • Find structurally similar "twin" molecules across large datasets
  • Train custom pIC50 prediction models with cross-validation
  • Apply drug-likeness filters (Lipinski's Rule of 5)
  • Multi-user support with background job queue & cancellation

How It Works

Our platform combines advanced molecular fingerprinting with machine learning to accelerate your drug discovery workflow

1

Upload Data

Load query and target datasets in CSV, TSV, Excel, SDF, MOL, or SMILES formats. Automatic column detection and format recognition.

2

Twin Detection

Fingerprint-blocked parallel search identifies structurally similar molecules using RBF kernel similarity and Z-score analysis.

3

Drug Filtering

Apply drug-likeness filters (MW, logP, HBD, HBA, TPSA, rotatable bonds) followed by pIC50 prediction using your active model.

4

Review Results

Browse top high-activity molecules with structure viewer, download CSV reports and a comprehensive PDF analysis report.

Key Features

Powerful tools designed for modern computational chemistry and drug discovery

Twin Detection Algorithm

Memory-efficient parallel processing identifies molecules with similar element composition using RBF kernel similarity and Z-score analysis across fingerprint blocks.

Model Training

Train custom CatBoost regressors on your pIC50 data with automated hyperparameter tuning, train/val/test splits, 2% holdout validation, and streaming log output.

Drug-Likeness & pIC50

Apply Lipinski filters (MW, logP, HBD, HBA, TPSA, RotB) then predict pIC50 using your selected active model. View top-10 high-activity molecules with twin pair details.

Multi-Format Support

Seamlessly work with CSV, TSV, Excel, SDF, MOL, and SMILES. Automatic format detection, column mapping, and SMILES duplicate removal.

Background Job Queue

Multi-user job queue with status polling, per-user model isolation, and job cancellation support. No waiting — start and monitor jobs asynchronously.

Scalable & Optimized

Handle datasets up to 2GB with chunked loading, batch descriptor computation, process-parallel twin search, and automatic memory management.

About TwinSAR

TwinSAR is an advanced computational chemistry platform designed to accelerate drug discovery through intelligent molecular analysis. It combines twin detection algorithms with machine learning-powered pIC50 prediction in a multi-user web application.

The twin detection methodology identifies molecules with similar elemental composition across large datasets using 8 single-element ratios (C, N, O, F, S, Br, Cl, I). Fingerprint-blocked parallel search with RBF kernel similarity and Z-score analysis finds twin pairs efficiently.

The integrated pIC50 prediction system lets users train custom CatBoost models on their own data via a streaming training interface with real-time step-by-step progress. Active model selection, per-user model isolation, and background job processing with cancellation support are built in.

Twin Detection: Uses 8 fixed elements (C, N, O, F, S, Br, Cl, I) with 8 individual element-atom ratios for consistent cross-dataset comparison. Molecules containing other elements (P, Si, B, etc.) are handled gracefully — they pass through twin detection with zero-count ratios and are fully supported in model training with full descriptor computation.

Python RDKit CatBoost scikit-learn Flask Bootstrap

8

Element Ratios (single-element)

500K

Max Target Molecules

6.5

pIC50 Threshold

8

Elements (C,N,O,F,S,Br,Cl,I)

Our Team

Meet the researchers and developers behind TwinSAR

Serdar Durdağı

Prof. Dr. Serdar Durdağı

Scientific Supervisor & Head of DurdağıLab

Providing scientific guidance for the TwinSAR project.

Haris Kulosmanovic

Haris Kulosmanovic

Physicist

Dr. Cem Uğuz

Dr. Cem Uğuz

Doctor of Philosophy Degree holder Physicist

Muhammet Eren Uluğ

Muhammet Eren Uluğ

Computational Biologist & Machine Learning Expert

Ready to Accelerate Your Drug Discovery?

Start analyzing your molecular datasets today with TwinSAR

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